Oct 15, 2020 9:16:11 AM org.apache.catalina.startup.VersionLoggerListener log INFO: Server version: Apache Tomcat/7.0.61 Oct 15, 2020 9:16:11 AM org.apache.catalina.startup.VersionLoggerListener log INFO: Server built: Mar 27 2015 12:03:56 UTC Oct 15, 2020 9:16:11 AM org.apache.catalina.startup.VersionLoggerListener log INFO: Server number: 7.0.61.0 Oct 15, 2020 9:16:11 AM org.apache.catalina.startup.VersionLoggerListener log INFO: OS Name: Windows 2003 Oct 15, 2020 9:16:11 AM org.apache.catalina.startup.VersionLoggerListener log INFO: OS Version: 5.2 Oct 15, 2020 9:16:11 AM org.apache.catalina.startup.VersionLoggerListener log INFO: Architecture: x86 Oct 15, 2020 9:16:11 AM org.apache.catalina.startup.VersionLoggerListener log INFO: Java Home: C:\Program Files\Java\jdk1.8.0_51\jre Oct 15, 2020 9:16:11 AM org.apache.catalina.startup.VersionLoggerListener log INFO: JVM Version: 1.8.0_51-b16 Oct 15, 2020 9:16:11 AM org.apache.catalina.startup.VersionLoggerListener log INFO: JVM Vendor: Oracle Corporation Oct 15, 2020 9:16:11 AM org.apache.catalina.startup.VersionLoggerListener log INFO: CATALINA_BASE: D:\OpenSpecimen\Production\Apps\tomcat-as Oct 15, 2020 9:16:11 AM org.apache.catalina.startup.VersionLoggerListener log INFO: CATALINA_HOME: D:\OpenSpecimen\Production\Apps\tomcat-as Oct 15, 2020 9:16:11 AM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Dcatalina.home=D:\OpenSpecimen\Production\Apps\tomcat-as Oct 15, 2020 9:16:11 AM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Dcatalina.base=D:\OpenSpecimen\Production\Apps\tomcat-as Oct 15, 2020 9:16:11 AM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Djava.endorsed.dirs=D:\OpenSpecimen\Production\Apps\tomcat-as\endorsed Oct 15, 2020 9:16:11 AM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Djava.io.tmpdir=D:\OpenSpecimen\Production\Apps\tomcat-as\temp Oct 15, 2020 9:16:11 AM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Djava.util.logging.manager=org.apache.juli.ClassLoaderLogManager Oct 15, 2020 9:16:11 AM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Djava.util.logging.config.file=D:\OpenSpecimen\Production\Apps\tomcat-as\conf\logging.properties Oct 15, 2020 9:16:11 AM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: exit Oct 15, 2020 9:16:11 AM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Xms128m Oct 15, 2020 9:16:11 AM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Xmx256m Oct 15, 2020 9:16:11 AM org.apache.catalina.core.AprLifecycleListener lifecycleEvent INFO: The APR based Apache Tomcat Native library which allows optimal performance in production environments was not found on the java.library.path: D:\OpenSpecimen\Production\Apps\tomcat-as\bin;C:\WINDOWS\Sun\Java\bin;C:\WINDOWS\system32;C:\WINDOWS;C:\Documents and Settings\All Users\Application Data\Oracle\Java\javapath;C:\Program Files\Java\jdk1.7.0_01\bin;C:\WINDOWS\system32;C:\WINDOWS;C:\WINDOWS\System32\Wbem;;D:\catissue\apache-ant-1.7.0\bin;C:\Program Files\MySQL\MySQL Server 5.1\bin;C:\apache-ant-1.7.1\bin;. Oct 15, 2020 9:16:12 AM org.apache.coyote.AbstractProtocol init INFO: Initializing ProtocolHandler ["http-bio-8080"] Oct 15, 2020 9:16:13 AM org.apache.coyote.AbstractProtocol init INFO: Initializing ProtocolHandler ["ajp-bio-8009"] Oct 15, 2020 9:16:13 AM org.apache.catalina.startup.Catalina load INFO: Initialization processed in 3492 ms Oct 15, 2020 9:16:13 AM org.apache.catalina.core.StandardService startInternal INFO: Starting service Catalina Oct 15, 2020 9:16:13 AM org.apache.catalina.core.StandardEngine startInternal INFO: Starting Servlet Engine: Apache Tomcat/7.0.61 Oct 15, 2020 9:16:14 AM org.apache.catalina.startup.HostConfig deployWAR INFO: Deploying web application archive D:\OpenSpecimen\Production\Apps\tomcat-as\webapps\openspecimen.war Oct 15, 2020 9:22:14 AM org.apache.catalina.core.StandardContext startInternal SEVERE: Error listenerStart Oct 15, 2020 9:22:14 AM org.apache.catalina.util.SessionIdGeneratorBase createSecureRandom INFO: Creation of SecureRandom instance for session ID generation using [SHA1PRNG] took [141] milliseconds. Oct 15, 2020 9:22:14 AM org.apache.catalina.core.StandardContext startInternal SEVERE: Context [/openspecimen] startup failed due to previous errors Oct 15, 2020 9:22:14 AM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads SEVERE: The web application [/openspecimen] appears to have started a thread named [Abandoned connection cleanup thread] but has failed to stop it. This is very likely to create a memory leak. Oct 15, 2020 9:22:14 AM org.apache.catalina.startup.HostConfig deployWAR INFO: Deployment of web application archive D:\OpenSpecimen\Production\Apps\tomcat-as\webapps\openspecimen.war has finished in 360,197 ms Oct 15, 2020 9:22:14 AM org.apache.catalina.startup.HostConfig deployDirectory INFO: Deploying web application directory D:\OpenSpecimen\Production\Apps\tomcat-as\webapps\docs Oct 15, 2020 9:22:14 AM org.apache.catalina.startup.HostConfig deployDirectory INFO: Deployment of web application directory D:\OpenSpecimen\Production\Apps\tomcat-as\webapps\docs has finished in 485 ms Oct 15, 2020 9:22:14 AM org.apache.catalina.startup.HostConfig deployDirectory INFO: Deploying web application directory D:\OpenSpecimen\Production\Apps\tomcat-as\webapps\examples Oct 15, 2020 9:22:15 AM org.apache.catalina.startup.HostConfig deployDirectory INFO: Deployment of web application directory D:\OpenSpecimen\Production\Apps\tomcat-as\webapps\examples has finished in 813 ms Oct 15, 2020 9:22:15 AM org.apache.catalina.startup.HostConfig deployDirectory INFO: Deploying web application directory D:\OpenSpecimen\Production\Apps\tomcat-as\webapps\host-manager Oct 15, 2020 9:22:15 AM org.apache.catalina.startup.HostConfig deployDirectory INFO: Deployment of web application directory D:\OpenSpecimen\Production\Apps\tomcat-as\webapps\host-manager has finished in 422 ms Oct 15, 2020 9:22:15 AM org.apache.catalina.startup.HostConfig deployDirectory INFO: Deploying web application directory D:\OpenSpecimen\Production\Apps\tomcat-as\webapps\manager Oct 15, 2020 9:22:16 AM org.apache.catalina.startup.HostConfig deployDirectory INFO: Deployment of web application directory D:\OpenSpecimen\Production\Apps\tomcat-as\webapps\manager has finished in 391 ms Oct 15, 2020 9:22:16 AM org.apache.catalina.startup.HostConfig deployDirectory INFO: Deploying web application directory D:\OpenSpecimen\Production\Apps\tomcat-as\webapps\ROOT Oct 15, 2020 9:22:16 AM org.apache.catalina.startup.HostConfig deployDirectory INFO: Deployment of web application directory D:\OpenSpecimen\Production\Apps\tomcat-as\webapps\ROOT has finished in 375 ms Oct 15, 2020 9:22:16 AM org.apache.coyote.AbstractProtocol start INFO: Starting ProtocolHandler ["http-bio-8080"] Oct 15, 2020 9:22:16 AM org.apache.coyote.AbstractProtocol start INFO: Starting ProtocolHandler ["ajp-bio-8009"] Oct 15, 2020 9:22:16 AM org.apache.catalina.startup.Catalina start INFO: Server startup in 363338 ms Oct 15, 2020 10:46:07 AM org.apache.coyote.AbstractProtocol pause INFO: Pausing ProtocolHandler ["http-bio-8080"] Oct 15, 2020 10:46:07 AM org.apache.coyote.AbstractProtocol pause INFO: Pausing ProtocolHandler ["ajp-bio-8009"] Oct 15, 2020 10:46:08 AM org.apache.catalina.core.StandardService stopInternal INFO: Stopping service Catalina Oct 15, 2020 10:46:08 AM org.apache.coyote.AbstractProtocol stop INFO: Stopping ProtocolHandler ["http-bio-8080"] Oct 15, 2020 10:46:08 AM org.apache.coyote.AbstractProtocol stop INFO: Stopping ProtocolHandler ["ajp-bio-8009"] Oct 15, 2020 10:46:16 AM org.apache.catalina.startup.VersionLoggerListener log INFO: Server version: Apache Tomcat/7.0.61 Oct 15, 2020 10:46:16 AM org.apache.catalina.startup.VersionLoggerListener log INFO: Server built: Mar 27 2015 12:03:56 UTC Oct 15, 2020 10:46:16 AM org.apache.catalina.startup.VersionLoggerListener log INFO: Server number: 7.0.61.0 Oct 15, 2020 10:46:16 AM org.apache.catalina.startup.VersionLoggerListener log INFO: OS Name: Windows 2003 Oct 15, 2020 10:46:16 AM org.apache.catalina.startup.VersionLoggerListener log INFO: OS Version: 5.2 Oct 15, 2020 10:46:16 AM org.apache.catalina.startup.VersionLoggerListener log INFO: Architecture: x86 Oct 15, 2020 10:46:16 AM org.apache.catalina.startup.VersionLoggerListener log INFO: Java Home: C:\Program Files\Java\jdk1.8.0_51\jre Oct 15, 2020 10:46:16 AM org.apache.catalina.startup.VersionLoggerListener log INFO: JVM Version: 1.8.0_51-b16 Oct 15, 2020 10:46:16 AM org.apache.catalina.startup.VersionLoggerListener log INFO: JVM Vendor: Oracle Corporation Oct 15, 2020 10:46:16 AM org.apache.catalina.startup.VersionLoggerListener log INFO: CATALINA_BASE: D:\OpenSpecimen\Production\Apps\tomcat-as Oct 15, 2020 10:46:16 AM org.apache.catalina.startup.VersionLoggerListener log INFO: CATALINA_HOME: D:\OpenSpecimen\Production\Apps\tomcat-as Oct 15, 2020 10:46:16 AM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Dcatalina.home=D:\OpenSpecimen\Production\Apps\tomcat-as Oct 15, 2020 10:46:16 AM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Dcatalina.base=D:\OpenSpecimen\Production\Apps\tomcat-as Oct 15, 2020 10:46:16 AM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Djava.endorsed.dirs=D:\OpenSpecimen\Production\Apps\tomcat-as\endorsed Oct 15, 2020 10:46:16 AM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Djava.io.tmpdir=D:\OpenSpecimen\Production\Apps\tomcat-as\temp Oct 15, 2020 10:46:16 AM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Djava.util.logging.manager=org.apache.juli.ClassLoaderLogManager Oct 15, 2020 10:46:16 AM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Djava.util.logging.config.file=D:\OpenSpecimen\Production\Apps\tomcat-as\conf\logging.properties Oct 15, 2020 10:46:16 AM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: exit Oct 15, 2020 10:46:16 AM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Xms128m Oct 15, 2020 10:46:16 AM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Xmx256m Oct 15, 2020 10:46:16 AM org.apache.catalina.core.AprLifecycleListener lifecycleEvent INFO: The APR based Apache Tomcat Native library which allows optimal performance in production environments was not found on the java.library.path: D:\OpenSpecimen\Production\Apps\tomcat-as\bin;C:\WINDOWS\Sun\Java\bin;C:\WINDOWS\system32;C:\WINDOWS;C:\Documents and Settings\All Users\Application Data\Oracle\Java\javapath;C:\Program Files\Java\jdk1.7.0_01\bin;C:\WINDOWS\system32;C:\WINDOWS;C:\WINDOWS\System32\Wbem;;D:\catissue\apache-ant-1.7.0\bin;C:\Program Files\MySQL\MySQL Server 5.1\bin;C:\apache-ant-1.7.1\bin;. Oct 15, 2020 10:46:19 AM org.apache.coyote.AbstractProtocol init INFO: Initializing ProtocolHandler ["http-bio-8080"] Oct 15, 2020 10:46:19 AM org.apache.coyote.AbstractProtocol init INFO: Initializing ProtocolHandler ["ajp-bio-8009"] Oct 15, 2020 10:46:19 AM org.apache.catalina.startup.Catalina load INFO: Initialization processed in 3946 ms Oct 15, 2020 10:46:19 AM org.apache.catalina.core.StandardService startInternal INFO: Starting service Catalina Oct 15, 2020 10:46:19 AM org.apache.catalina.core.StandardEngine startInternal INFO: Starting Servlet Engine: Apache Tomcat/7.0.61 Oct 15, 2020 10:46:19 AM org.apache.catalina.startup.HostConfig deployWAR INFO: Deploying web application archive D:\OpenSpecimen\Production\Apps\tomcat-as\webapps\openspecimen.war Oct 15, 2020 10:51:59 AM org.apache.catalina.core.StandardContext startInternal SEVERE: Error listenerStart Oct 15, 2020 10:52:00 AM org.apache.catalina.util.SessionIdGeneratorBase createSecureRandom INFO: Creation of SecureRandom instance for session ID generation using [SHA1PRNG] took [110] milliseconds. Oct 15, 2020 10:52:00 AM org.apache.catalina.core.StandardContext startInternal SEVERE: Context [/openspecimen] startup failed due to previous errors Oct 15, 2020 10:52:00 AM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads SEVERE: The web application [/openspecimen] appears to have started a thread named [Abandoned connection cleanup thread] but has failed to stop it. This is very likely to create a memory leak. Oct 15, 2020 10:52:00 AM org.apache.catalina.startup.HostConfig deployWAR INFO: Deployment of web application archive D:\OpenSpecimen\Production\Apps\tomcat-as\webapps\openspecimen.war has finished in 340,506 ms Oct 15, 2020 10:52:00 AM org.apache.catalina.startup.HostConfig deployDirectory INFO: Deploying web application directory D:\OpenSpecimen\Production\Apps\tomcat-as\webapps\docs Oct 15, 2020 10:52:00 AM org.apache.catalina.startup.HostConfig deployDirectory INFO: Deployment of web application directory D:\OpenSpecimen\Production\Apps\tomcat-as\webapps\docs has finished in 438 ms Oct 15, 2020 10:52:00 AM org.apache.catalina.startup.HostConfig deployDirectory INFO: Deploying web application directory D:\OpenSpecimen\Production\Apps\tomcat-as\webapps\examples Oct 15, 2020 10:52:01 AM org.apache.catalina.startup.HostConfig deployDirectory INFO: Deployment of web application directory D:\OpenSpecimen\Production\Apps\tomcat-as\webapps\examples has finished in 796 ms Oct 15, 2020 10:52:01 AM org.apache.catalina.startup.HostConfig deployDirectory INFO: Deploying web application directory D:\OpenSpecimen\Production\Apps\tomcat-as\webapps\host-manager Oct 15, 2020 10:52:01 AM org.apache.catalina.startup.HostConfig deployDirectory INFO: Deployment of web application directory D:\OpenSpecimen\Production\Apps\tomcat-as\webapps\host-manager has finished in 391 ms Oct 15, 2020 10:52:01 AM org.apache.catalina.startup.HostConfig deployDirectory INFO: Deploying web application directory D:\OpenSpecimen\Production\Apps\tomcat-as\webapps\manager Oct 15, 2020 10:52:02 AM org.apache.catalina.startup.HostConfig deployDirectory INFO: Deployment of web application directory D:\OpenSpecimen\Production\Apps\tomcat-as\webapps\manager has finished in 344 ms Oct 15, 2020 10:52:02 AM org.apache.catalina.startup.HostConfig deployDirectory INFO: Deploying web application directory D:\OpenSpecimen\Production\Apps\tomcat-as\webapps\ROOT Oct 15, 2020 10:52:02 AM org.apache.catalina.startup.HostConfig deployDirectory INFO: Deployment of web application directory D:\OpenSpecimen\Production\Apps\tomcat-as\webapps\ROOT has finished in 375 ms Oct 15, 2020 10:52:02 AM org.apache.coyote.AbstractProtocol start INFO: Starting ProtocolHandler ["http-bio-8080"] Oct 15, 2020 10:52:02 AM org.apache.coyote.AbstractProtocol start INFO: Starting ProtocolHandler ["ajp-bio-8009"] Oct 15, 2020 10:52:02 AM org.apache.catalina.startup.Catalina start INFO: Server startup in 343180 ms Oct 15, 2020 2:19:19 PM org.apache.coyote.AbstractProtocol pause INFO: Pausing ProtocolHandler ["http-bio-8080"] Oct 15, 2020 2:19:19 PM org.apache.coyote.AbstractProtocol pause INFO: Pausing ProtocolHandler ["ajp-bio-8009"] Oct 15, 2020 2:19:19 PM org.apache.catalina.core.StandardService stopInternal INFO: Stopping service Catalina Oct 15, 2020 2:19:19 PM org.apache.coyote.AbstractProtocol stop INFO: Stopping ProtocolHandler ["http-bio-8080"] Oct 15, 2020 2:19:19 PM org.apache.coyote.AbstractProtocol stop INFO: Stopping ProtocolHandler ["ajp-bio-8009"] Oct 15, 2020 2:19:27 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Server version: Apache Tomcat/7.0.61 Oct 15, 2020 2:19:27 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Server built: Mar 27 2015 12:03:56 UTC Oct 15, 2020 2:19:27 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Server number: 7.0.61.0 Oct 15, 2020 2:19:27 PM org.apache.catalina.startup.VersionLoggerListener log INFO: OS Name: Windows 2003 Oct 15, 2020 2:19:27 PM org.apache.catalina.startup.VersionLoggerListener log INFO: OS Version: 5.2 Oct 15, 2020 2:19:27 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Architecture: x86 Oct 15, 2020 2:19:27 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Java Home: C:\Program Files\Java\jdk1.8.0_51\jre Oct 15, 2020 2:19:27 PM org.apache.catalina.startup.VersionLoggerListener log INFO: JVM Version: 1.8.0_51-b16 Oct 15, 2020 2:19:27 PM org.apache.catalina.startup.VersionLoggerListener log INFO: JVM Vendor: Oracle Corporation Oct 15, 2020 2:19:27 PM org.apache.catalina.startup.VersionLoggerListener log INFO: CATALINA_BASE: D:\OpenSpecimen\Production\Apps\tomcat-as Oct 15, 2020 2:19:27 PM org.apache.catalina.startup.VersionLoggerListener log INFO: CATALINA_HOME: D:\OpenSpecimen\Production\Apps\tomcat-as Oct 15, 2020 2:19:27 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Dcatalina.home=D:\OpenSpecimen\Production\Apps\tomcat-as Oct 15, 2020 2:19:27 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Dcatalina.base=D:\OpenSpecimen\Production\Apps\tomcat-as Oct 15, 2020 2:19:27 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Djava.endorsed.dirs=D:\OpenSpecimen\Production\Apps\tomcat-as\endorsed Oct 15, 2020 2:19:27 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Djava.io.tmpdir=D:\OpenSpecimen\Production\Apps\tomcat-as\temp Oct 15, 2020 2:19:27 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Djava.util.logging.manager=org.apache.juli.ClassLoaderLogManager Oct 15, 2020 2:19:27 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Djava.util.logging.config.file=D:\OpenSpecimen\Production\Apps\tomcat-as\conf\logging.properties Oct 15, 2020 2:19:27 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: exit Oct 15, 2020 2:19:27 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Xms128m Oct 15, 2020 2:19:27 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Xmx256m Oct 15, 2020 2:19:27 PM org.apache.catalina.core.AprLifecycleListener lifecycleEvent INFO: The APR based Apache Tomcat Native library which allows optimal performance in production environments was not found on the java.library.path: D:\OpenSpecimen\Production\Apps\tomcat-as\bin;C:\WINDOWS\Sun\Java\bin;C:\WINDOWS\system32;C:\WINDOWS;C:\Documents and Settings\All Users\Application Data\Oracle\Java\javapath;C:\Program Files\Java\jdk1.7.0_01\bin;C:\WINDOWS\system32;C:\WINDOWS;C:\WINDOWS\System32\Wbem;;D:\catissue\apache-ant-1.7.0\bin;C:\Program Files\MySQL\MySQL Server 5.1\bin;C:\apache-ant-1.7.1\bin;. Oct 15, 2020 2:19:29 PM org.apache.coyote.AbstractProtocol init INFO: Initializing ProtocolHandler ["http-bio-8080"] Oct 15, 2020 2:19:29 PM org.apache.coyote.AbstractProtocol init INFO: Initializing ProtocolHandler ["ajp-bio-8009"] Oct 15, 2020 2:19:29 PM org.apache.catalina.startup.Catalina load INFO: Initialization processed in 3781 ms Oct 15, 2020 2:19:29 PM org.apache.catalina.core.StandardService startInternal INFO: Starting service Catalina Oct 15, 2020 2:19:29 PM org.apache.catalina.core.StandardEngine startInternal INFO: Starting Servlet Engine: Apache Tomcat/7.0.61 Oct 15, 2020 2:19:29 PM org.apache.catalina.startup.HostConfig deployWAR INFO: Deploying web application archive D:\OpenSpecimen\Production\Apps\tomcat-as\webapps\openspecimen.war Oct 15, 2020 2:25:12 PM org.apache.catalina.core.StandardContext startInternal SEVERE: Error listenerStart Oct 15, 2020 2:25:13 PM org.apache.catalina.util.SessionIdGeneratorBase createSecureRandom INFO: Creation of SecureRandom instance for session ID generation using [SHA1PRNG] took [156] milliseconds. Oct 15, 2020 2:25:13 PM org.apache.catalina.core.StandardContext startInternal SEVERE: Context [/openspecimen] startup failed due to previous errors Oct 15, 2020 2:25:13 PM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads SEVERE: The web application [/openspecimen] appears to have started a thread named [Abandoned connection cleanup thread] but has failed to stop it. This is very likely to create a memory leak. Oct 15, 2020 2:25:13 PM org.apache.catalina.startup.HostConfig deployWAR INFO: Deployment of web application archive D:\OpenSpecimen\Production\Apps\tomcat-as\webapps\openspecimen.war has finished in 343,371 ms Oct 15, 2020 2:25:13 PM org.apache.catalina.startup.HostConfig deployDirectory INFO: Deploying web application directory D:\OpenSpecimen\Production\Apps\tomcat-as\webapps\docs Oct 15, 2020 2:25:13 PM org.apache.catalina.startup.HostConfig deployDirectory INFO: Deployment of web application directory D:\OpenSpecimen\Production\Apps\tomcat-as\webapps\docs has finished in 391 ms Oct 15, 2020 2:25:13 PM org.apache.catalina.startup.HostConfig deployDirectory INFO: Deploying web application directory D:\OpenSpecimen\Production\Apps\tomcat-as\webapps\examples Oct 15, 2020 2:25:14 PM org.apache.catalina.startup.HostConfig deployDirectory INFO: Deployment of web application directory D:\OpenSpecimen\Production\Apps\tomcat-as\webapps\examples has finished in 781 ms Oct 15, 2020 2:25:14 PM org.apache.catalina.startup.HostConfig deployDirectory INFO: Deploying web application directory D:\OpenSpecimen\Production\Apps\tomcat-as\webapps\host-manager Oct 15, 2020 2:25:14 PM org.apache.catalina.startup.HostConfig deployDirectory INFO: Deployment of web application directory D:\OpenSpecimen\Production\Apps\tomcat-as\webapps\host-manager has finished in 360 ms Oct 15, 2020 2:25:14 PM org.apache.catalina.startup.HostConfig deployDirectory INFO: Deploying web application directory D:\OpenSpecimen\Production\Apps\tomcat-as\webapps\manager Oct 15, 2020 2:25:15 PM org.apache.catalina.startup.HostConfig deployDirectory INFO: Deployment of web application directory D:\OpenSpecimen\Production\Apps\tomcat-as\webapps\manager has finished in 406 ms Oct 15, 2020 2:25:15 PM org.apache.catalina.startup.HostConfig deployDirectory INFO: Deploying web application directory D:\OpenSpecimen\Production\Apps\tomcat-as\webapps\ROOT Oct 15, 2020 2:25:15 PM org.apache.catalina.startup.HostConfig deployDirectory INFO: Deployment of web application directory D:\OpenSpecimen\Production\Apps\tomcat-as\webapps\ROOT has finished in 328 ms Oct 15, 2020 2:25:15 PM org.apache.coyote.AbstractProtocol start INFO: Starting ProtocolHandler ["http-bio-8080"] Oct 15, 2020 2:25:15 PM org.apache.coyote.AbstractProtocol start INFO: Starting ProtocolHandler ["ajp-bio-8009"] Oct 15, 2020 2:25:15 PM org.apache.catalina.startup.Catalina start INFO: Server startup in 345586 ms Oct 15, 2020 2:37:30 PM org.apache.coyote.AbstractProtocol pause INFO: Pausing ProtocolHandler ["http-bio-8080"] Oct 15, 2020 2:37:30 PM org.apache.coyote.AbstractProtocol pause INFO: Pausing ProtocolHandler ["ajp-bio-8009"] Oct 15, 2020 2:37:30 PM org.apache.catalina.core.StandardService stopInternal INFO: Stopping service Catalina Oct 15, 2020 2:37:30 PM org.apache.coyote.AbstractProtocol stop INFO: Stopping ProtocolHandler ["http-bio-8080"] Oct 15, 2020 2:37:30 PM org.apache.coyote.AbstractProtocol stop INFO: Stopping ProtocolHandler ["ajp-bio-8009"] Oct 15, 2020 2:37:36 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Server version: Apache Tomcat/7.0.61 Oct 15, 2020 2:37:36 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Server built: Mar 27 2015 12:03:56 UTC Oct 15, 2020 2:37:36 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Server number: 7.0.61.0 Oct 15, 2020 2:37:36 PM org.apache.catalina.startup.VersionLoggerListener log INFO: OS Name: Windows 2003 Oct 15, 2020 2:37:36 PM org.apache.catalina.startup.VersionLoggerListener log INFO: OS Version: 5.2 Oct 15, 2020 2:37:36 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Architecture: x86 Oct 15, 2020 2:37:36 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Java Home: C:\Program Files\Java\jdk1.8.0_51\jre Oct 15, 2020 2:37:36 PM org.apache.catalina.startup.VersionLoggerListener log INFO: JVM Version: 1.8.0_51-b16 Oct 15, 2020 2:37:36 PM org.apache.catalina.startup.VersionLoggerListener log INFO: JVM Vendor: Oracle Corporation Oct 15, 2020 2:37:36 PM org.apache.catalina.startup.VersionLoggerListener log INFO: CATALINA_BASE: D:\OpenSpecimen\Production\Apps\tomcat-as Oct 15, 2020 2:37:36 PM org.apache.catalina.startup.VersionLoggerListener log INFO: CATALINA_HOME: D:\OpenSpecimen\Production\Apps\tomcat-as Oct 15, 2020 2:37:36 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Dcatalina.home=D:\OpenSpecimen\Production\Apps\tomcat-as Oct 15, 2020 2:37:36 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Dcatalina.base=D:\OpenSpecimen\Production\Apps\tomcat-as Oct 15, 2020 2:37:36 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Djava.endorsed.dirs=D:\OpenSpecimen\Production\Apps\tomcat-as\endorsed Oct 15, 2020 2:37:36 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Djava.io.tmpdir=D:\OpenSpecimen\Production\Apps\tomcat-as\temp Oct 15, 2020 2:37:36 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Djava.util.logging.manager=org.apache.juli.ClassLoaderLogManager Oct 15, 2020 2:37:36 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Djava.util.logging.config.file=D:\OpenSpecimen\Production\Apps\tomcat-as\conf\logging.properties Oct 15, 2020 2:37:36 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: exit Oct 15, 2020 2:37:36 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Xms128m Oct 15, 2020 2:37:36 PM org.apache.catalina.startup.VersionLoggerListener log INFO: Command line argument: -Xmx256m Oct 15, 2020 2:37:36 PM org.apache.catalina.core.AprLifecycleListener lifecycleEvent INFO: The APR based Apache Tomcat Native library which allows optimal performance in production environments was not found on the java.library.path: D:\OpenSpecimen\Production\Apps\tomcat-as\bin;C:\WINDOWS\Sun\Java\bin;C:\WINDOWS\system32;C:\WINDOWS;C:\Documents and Settings\All Users\Application Data\Oracle\Java\javapath;C:\Program Files\Java\jdk1.7.0_01\bin;C:\WINDOWS\system32;C:\WINDOWS;C:\WINDOWS\System32\Wbem;;D:\catissue\apache-ant-1.7.0\bin;C:\Program Files\MySQL\MySQL Server 5.1\bin;C:\apache-ant-1.7.1\bin;. Oct 15, 2020 2:37:37 PM org.apache.coyote.AbstractProtocol init INFO: Initializing ProtocolHandler ["http-bio-8080"] Oct 15, 2020 2:37:37 PM org.apache.coyote.AbstractProtocol init INFO: Initializing ProtocolHandler ["ajp-bio-8009"] Oct 15, 2020 2:37:37 PM org.apache.catalina.startup.Catalina load INFO: Initialization processed in 1056 ms Oct 15, 2020 2:37:37 PM org.apache.catalina.core.StandardService startInternal INFO: Starting service Catalina Oct 15, 2020 2:37:37 PM org.apache.catalina.core.StandardEngine startInternal INFO: Starting Servlet Engine: Apache Tomcat/7.0.61 Oct 15, 2020 2:37:37 PM org.apache.catalina.startup.HostConfig deployWAR INFO: Deploying web application archive D:\OpenSpecimen\Production\Apps\tomcat-as\webapps\openspecimen.war Oct 15, 2020 2:42:44 PM org.apache.catalina.core.StandardContext startInternal SEVERE: Error listenerStart Oct 15, 2020 2:42:45 PM org.apache.catalina.util.SessionIdGeneratorBase createSecureRandom INFO: Creation of SecureRandom instance for session ID generation using [SHA1PRNG] took [609] milliseconds. Oct 15, 2020 2:42:45 PM org.apache.catalina.core.StandardContext startInternal SEVERE: Context [/openspecimen] startup failed due to previous errors Oct 15, 2020 2:42:45 PM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads SEVERE: The web application [/openspecimen] appears to have started a thread named [Abandoned connection cleanup thread] but has failed to stop it. This is very likely to create a memory leak. Oct 15, 2020 2:42:45 PM org.apache.catalina.startup.HostConfig deployWAR INFO: Deployment of web application archive D:\OpenSpecimen\Production\Apps\tomcat-as\webapps\openspecimen.war has finished in 308,103 ms Oct 15, 2020 2:42:45 PM org.apache.catalina.startup.HostConfig deployDirectory INFO: Deploying web application directory D:\OpenSpecimen\Production\Apps\tomcat-as\webapps\docs Oct 15, 2020 2:42:45 PM org.apache.catalina.startup.HostConfig deployDirectory INFO: Deployment of web application directory D:\OpenSpecimen\Production\Apps\tomcat-as\webapps\docs has finished in 360 ms Oct 15, 2020 2:42:45 PM org.apache.catalina.startup.HostConfig deployDirectory INFO: Deploying web application directory D:\OpenSpecimen\Production\Apps\tomcat-as\webapps\examples Oct 15, 2020 2:42:46 PM org.apache.catalina.startup.HostConfig deployDirectory INFO: Deployment of web application directory D:\OpenSpecimen\Production\Apps\tomcat-as\webapps\examples has finished in 562 ms Oct 15, 2020 2:42:46 PM org.apache.catalina.startup.HostConfig deployDirectory INFO: Deploying web application directory D:\OpenSpecimen\Production\Apps\tomcat-as\webapps\host-manager Oct 15, 2020 2:42:46 PM org.apache.catalina.startup.HostConfig deployDirectory INFO: Deployment of web application directory D:\OpenSpecimen\Production\Apps\tomcat-as\webapps\host-manager has finished in 359 ms Oct 15, 2020 2:42:46 PM org.apache.catalina.startup.HostConfig deployDirectory INFO: Deploying web application directory D:\OpenSpecimen\Production\Apps\tomcat-as\webapps\manager Oct 15, 2020 2:42:47 PM org.apache.catalina.startup.HostConfig deployDirectory INFO: Deployment of web application directory D:\OpenSpecimen\Production\Apps\tomcat-as\webapps\manager has finished in 344 ms Oct 15, 2020 2:42:47 PM org.apache.catalina.startup.HostConfig deployDirectory INFO: Deploying web application directory D:\OpenSpecimen\Production\Apps\tomcat-as\webapps\ROOT Oct 15, 2020 2:42:47 PM org.apache.catalina.startup.HostConfig deployDirectory INFO: Deployment of web application directory D:\OpenSpecimen\Production\Apps\tomcat-as\webapps\ROOT has finished in 312 ms Oct 15, 2020 2:42:47 PM org.apache.coyote.AbstractProtocol start INFO: Starting ProtocolHandler ["http-bio-8080"] Oct 15, 2020 2:42:47 PM org.apache.coyote.AbstractProtocol start INFO: Starting ProtocolHandler ["ajp-bio-8009"] Oct 15, 2020 2:42:47 PM org.apache.catalina.startup.Catalina start INFO: Server startup in 310166 ms