Hi Sir,
We’ve viewed your error. You need to install all npm/bower/grunt dependencies, so please re-install these dependencies.
That will resolve your problem. If not, please revert.
Thanks.
thank u，I lost grunt.
Hi Jack,
It is not clear as to what error you are getting. Can you send us the log or screenshot of the error?
Thanks,
Vivek
The project didnot run on my computer.Because I cannot find the way to open my website. http://localhost:8080/openspecimen this comes 404 for me.
This error I had resolved,just run command npm install grunt,and then,gradle deploy build success.
Now I have new question,as I say,how to open the index.html to see the project on brower.
Hi Jack,
After starting the Tomcat, if you created the app/data directory, then monitor the “os.log” file. It will appear in the app/data/logs directory.
If the “os.log” file is not generated in this directory, you need to monitor the “catalina.out” file present in the tomcat/logs directory. And Check the errors.
If the os.log file is generated, then wait until the following line:
[main] INFO org.springframework.web.servlet.DispatcherServlet- FrameworkServlet ‘restApi’: initialization completed in 1754 ms
After this line, you can check the output in your browser at http://localhost:8080/openspecimen
Thanks,
Kaustubh
Here is the detail of os.log.
2020-12-24 13:34:37,887 [main] INFO com.krishagni.catissueplus.core.init.AppServletContextListener- Initialised logging configuration from following file: file:/D:/apache-tomcat-9.0.39/webapps/open/WEB-INF/classes/default-log4j.properties
2020-12-24 13:34:37,891 [main] INFO com.krishagni.catissueplus.core.init.AppServletContextListener-
OpenSpecimen, a Krishagni Product
Build Version :
Build Date : Mon Dec 21 14:39:34 CST 2020
Commit :
Present Time : Thu Dec 24 13:34:37 CST 2020
2020-12-24 13:34:37,891 [main] INFO com.krishagni.catissueplus.core.init.AppServletContextListener- Loading plugins from D:/plugins
2020-12-24 13:34:37,905 [main] INFO org.springframework.web.context.ContextLoader- Root WebApplicationContext: initialization started
2020-12-24 13:34:38,048 [main] INFO org.springframework.web.context.support.XmlWebApplicationContext- Refreshing Root WebApplicationContext: startup date [Thu Dec 24 13:34:38 CST 2020]; root of context hierarchy
2020-12-24 13:34:38,083 [main] INFO org.springframework.beans.factory.xml.XmlBeanDefinitionReader- Loading XML bean definitions from ServletContext resource [/WEB-INF/applicationContext.xml]
2020-12-24 13:34:38,311 [main] INFO org.springframework.security.core.SpringSecurityCoreVersion- You are running with Spring Security Core 4.2.8.RELEASE
2020-12-24 13:34:38,314 [main] INFO org.springframework.security.config.SecurityNamespaceHandler- Spring Security ‘config’ module version is 4.2.8.RELEASE
2020-12-24 13:34:38,807 [main] INFO org.springframework.beans.factory.xml.XmlBeanDefinitionReader- Loading XML bean definitions from ServletContext resource [/WEB-INF/migrationContext.xml]
2020-12-24 13:34:38,816 [main] INFO org.springframework.beans.factory.xml.XmlBeanDefinitionReader- Loading XML bean definitions from ServletContext resource [/WEB-INF/postInitContext.xml]
2020-12-24 13:34:39,205 [main] INFO org.springframework.scheduling.concurrent.ThreadPoolTaskScheduler- Initializing ExecutorService ‘taskScheduler’
2020-12-24 13:34:39,205 [main] INFO org.springframework.context.support.PostProcessorRegistrationDelegate$BeanPostProcessorChecker- Bean ‘taskScheduler’ of type [org.springframework.scheduling.concurrent.ThreadPoolTaskScheduler] is not eligible for getting processed by all BeanPostProcessors (for example: not eligible for auto-proxying)
2020-12-24 13:34:39,933 [main] INFO liquibase.executor.jvm.JdbcExecutor- SELECT COUNT() FROM open.DATABASECHANGELOGLOCK
2020-12-24 13:34:40,147 [main] INFO liquibase.executor.jvm.JdbcExecutor- SELECT COUNT() FROM open.DATABASECHANGELOGLOCK
2020-12-24 13:34:40,148 [main] INFO liquibase.executor.jvm.JdbcExecutor- SELECT LOCKED FROM open.DATABASECHANGELOGLOCK WHERE ID=1
2020-12-24 13:34:40,162 [main] INFO liquibase.lockservice.StandardLockService- Successfully acquired change log lock
2020-12-24 13:34:40,811 [main] INFO liquibase.executor.jvm.JdbcExecutor- SELECT MD5SUM FROM open.DATABASECHANGELOG WHERE MD5SUM IS NOT NULL LIMIT 1
2020-12-24 13:34:40,816 [main] INFO liquibase.executor.jvm.JdbcExecutor- SELECT COUNT() FROM open.DATABASECHANGELOG
2020-12-24 13:34:40,821 [main] INFO liquibase.changelog.StandardChangeLogHistoryService- Reading from open.DATABASECHANGELOG
2020-12-24 13:34:40,821 [main] INFO liquibase.executor.jvm.JdbcExecutor- SELECT * FROM open.DATABASECHANGELOG ORDER BY DATEEXECUTED ASC, ORDEREXECUTED ASC
2020-12-24 13:34:40,896 [main] INFO liquibase.lockservice.StandardLockService- Successfully released change log lock
2020-12-24 13:34:40,904 [main] INFO liquibase.executor.jvm.JdbcExecutor- SELECT COUNT() FROM open.DATABASECHANGELOGLOCK
2020-12-24 13:34:40,904 [main] INFO liquibase.executor.jvm.JdbcExecutor- SELECT COUNT() FROM open.DATABASECHANGELOGLOCK
2020-12-24 13:34:40,904 [main] INFO liquibase.executor.jvm.JdbcExecutor- SELECT LOCKED FROM open.DATABASECHANGELOGLOCK WHERE ID=1
2020-12-24 13:34:40,907 [main] INFO liquibase.lockservice.StandardLockService- Successfully acquired change log lock
2020-12-24 13:34:41,962 [main] INFO liquibase.executor.jvm.JdbcExecutor- SELECT MD5SUM FROM open.DATABASECHANGELOG WHERE MD5SUM IS NOT NULL LIMIT 1
2020-12-24 13:34:41,962 [main] INFO liquibase.executor.jvm.JdbcExecutor- SELECT COUNT() FROM open.DATABASECHANGELOG
2020-12-24 13:34:41,964 [main] INFO liquibase.changelog.StandardChangeLogHistoryService- Reading from open.DATABASECHANGELOG
2020-12-24 13:34:41,964 [main] INFO liquibase.executor.jvm.JdbcExecutor- SELECT * FROM open.DATABASECHANGELOG ORDER BY DATEEXECUTED ASC, ORDEREXECUTED ASC
2020-12-24 13:34:42,534 [main] INFO liquibase.executor.jvm.JdbcExecutor- select @@global.default_storage_engine
2020-12-24 13:34:42,534 [main] INFO liquibase.changelog.ChangeSet- ChangeSet db/db-os-pre-conditions.xml::Pre condition to check the storage engine::slakhani ran successfully in 1ms
2020-12-24 13:34:42,535 [main] INFO liquibase.executor.jvm.JdbcExecutor- SELECT MAX(ORDEREXECUTED) FROM open.DATABASECHANGELOG
2020-12-24 13:34:42,538 [main] INFO liquibase.executor.jvm.JdbcExecutor- UPDATE open.DATABASECHANGELOG SET DATEEXECUTED = NOW(), DEPLOYMENT_ID = ‘8788081987’, EXECTYPE = ‘RERAN’, MD5SUM = ‘8:d41d8cd98f00b204e9800998ecf8427e’, ORDEREXECUTED = 1951 WHERE ID = ‘Pre condition to check the storage engine’ AND AUTHOR = ‘slakhani’ AND FILENAME = ‘db/db-os-pre-conditions.xml’
2020-12-24 13:34:42,543 [main] INFO liquibase.executor.jvm.JdbcExecutor- select @@global.lower_case_table_names
2020-12-24 13:34:42,544 [main] INFO liquibase.changelog.ChangeSet- ChangeSet db/db-os-pre-conditions.xml::Pre condition to check the case sensitivity::nmarwaha ran successfully in 1ms
2020-12-24 13:34:42,544 [main] INFO liquibase.executor.jvm.JdbcExecutor- UPDATE open.DATABASECHANGELOG SET DATEEXECUTED = NOW(), DEPLOYMENT_ID = ‘8788081987’, EXECTYPE = ‘RERAN’, MD5SUM = ‘8:d41d8cd98f00b204e9800998ecf8427e’, ORDEREXECUTED = 1952 WHERE ID = ‘Pre condition to check the case sensitivity’ AND AUTHOR = ‘nmarwaha’ AND FILENAME = ‘db/db-os-pre-conditions.xml’
2020-12-24 13:34:42,566 [main] INFO liquibase.executor.jvm.JdbcExecutor- ALTER TABLE open.CATISSUE_USER DROP FOREIGN KEY FKB025CFC7FFA96920
2020-12-24 13:34:42,592 [main] INFO liquibase.changelog.ChangeSet- Change set db/2.0/schema.xml::Drop foreign key from CRG column in CATISSUE_USER::nmarwaha failed, but failOnError was false. Error: Can’t DROP ‘FKB025CFC7FFA96920’; check that column/key exists [Failed SQL: ALTER TABLE open.CATISSUE_USER DROP FOREIGN KEY FKB025CFC7FFA96920]
2020-12-24 13:34:42,594 [main] INFO liquibase.executor.jvm.JdbcExecutor- ALTER TABLE open.CATISSUE_USER DROP COLUMN WUSTLKEY
2020-12-24 13:34:42,594 [main] INFO liquibase.changelog.ChangeSet- Change set db/2.0/schema.xml::Drop WUSTLKEY column from CATISSUE_USER::nmarwaha failed, but failOnError was false. Error: Can’t DROP ‘WUSTLKEY’; check that column/key exists [Failed SQL: ALTER TABLE open.CATISSUE_USER DROP COLUMN WUSTLKEY]
2020-12-24 13:34:42,600 [main] INFO liquibase.executor.jvm.JdbcExecutor- ALTER TABLE open.CATISSUE_USER DROP KEY CSM_USER_ID_UNIQUE_KEY
2020-12-24 13:34:42,601 [main] INFO liquibase.changelog.ChangeSet- Change set db/2.0/schema.xml::Drop UK on csm_user_id from catissue user table::vlonushte failed, but failOnError was false. Error: Can’t DROP ‘CSM_USER_ID_UNIQUE_KEY’; check that column/key exists [Failed SQL: ALTER TABLE open.CATISSUE_USER DROP KEY CSM_USER_ID_UNIQUE_KEY]
2020-12-24 13:34:42,645 [main] INFO liquibase.lockservice.StandardLockService- Successfully released change log lock
2020-12-24 13:34:42,780 [main] INFO org.hibernate.Version- HHH000412: Hibernate Core {5.3.6.Final}
2020-12-24 13:34:42,781 [main] INFO org.hibernate.cfg.Environment- HHH000206: hibernate.properties not found
2020-12-24 13:34:43,585 [main] INFO org.hibernate.annotations.common.Version- HCANN000001: Hibernate Commons Annotations {5.0.4.Final}
2020-12-24 13:34:43,692 [main] INFO org.hibernate.dialect.Dialect- HHH000400: Using dialect: org.hibernate.dialect.MySQLDialect
2020-12-24 13:34:43,716 [main] INFO org.hibernate.engine.jdbc.env.internal.LobCreatorBuilderImpl- HHH000423: Disabling contextual LOB creation as JDBC driver reported JDBC version [3] less than 4
2020-12-24 13:34:43,724 [main] INFO org.hibernate.envers.boot.internal.EnversServiceImpl- Envers integration enabled? : true
2020-12-24 13:34:45,493 [main] INFO org.hibernate.hql.internal.QueryTranslatorFactoryInitiator- HHH000397: Using ASTQueryTranslatorFactory
2020-12-24 13:34:45,763 [main] INFO org.springframework.orm.hibernate5.HibernateTransactionManager- Using DataSource [org.apache.tomcat.dbcp.dbcp2.BasicDataSource@2ed7d757] of Hibernate SessionFactory for HibernateTransactionManager
2020-12-24 13:34:46,105 [main] INFO com.krishagni.catissueplus.core.common.service.impl.ConfigurationServiceImpl- App is using the locale: zh_CN
2020-12-24 13:34:46,356 [main] INFO org.springframework.scheduling.concurrent.ThreadPoolTaskExecutor- Initializing ExecutorService ‘taskExecutor’
2020-12-24 13:34:46,512 [main] INFO com.krishagni.catissueplus.core.common.service.impl.EmailServiceImpl- IMAP service is not configured. Will not poll for inbound emails.
2020-12-24 13:34:46,718 [main] WARN org.springframework.web.context.support.XmlWebApplicationContext- Exception encountered during context initialization - cancelling refresh attempt: org.springframework.beans.factory.BeanCreationException: Error creating bean with name ‘visitService’ defined in ServletContext resource [/WEB-INF/applicationContext.xml]: Cannot resolve reference to bean ‘specimenSvc’ while setting bean property ‘specimenSvc’; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name ‘specimenSvc’ defined in ServletContext resource [/WEB-INF/applicationContext.xml]: Cannot resolve reference to bean ‘specimenFactory’ while setting bean property ‘specimenFactory’; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name ‘specimenFactory’ defined in ServletContext resource [/WEB-INF/applicationContext.xml]: Cannot resolve reference to bean ‘storageContainerSvc’ while setting bean property ‘containerSvc’; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name ‘storageContainerSvc’ defined in ServletContext resource [/WEB-INF/applicationContext.xml]: Cannot resolve reference to bean ‘exportSvc’ while setting bean property ‘exportSvc’; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name ‘exportSvc’ defined in ServletContext resource [/WEB-INF/applicationContext.xml]: Cannot resolve reference to bean ‘objectSchemaFactory’ while setting bean property ‘schemaFactory’; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name ‘objectSchemaFactory’ defined in ServletContext resource [/WEB-INF/applicationContext.xml]: Error setting property values; nested exception is org.springframework.beans.PropertyBatchUpdateException; nested PropertyAccessExceptions (1) are:
PropertyAccessException 1: org.springframework.beans.MethodInvocationException: Property ‘schemaResources’ threw exception; nested exception is com.thoughtworks.xstream.io.StreamException:
2020-12-24 13:34:46,718 [main] INFO org.springframework.scheduling.concurrent.ThreadPoolTaskExecutor- Shutting down ExecutorService ‘taskExecutor’
2020-12-24 13:34:46,719 [main] INFO org.springframework.scheduling.concurrent.ThreadPoolTaskScheduler- Shutting down ExecutorService ‘taskScheduler’
2020-12-24 13:34:46,720 [main] ERROR org.springframework.web.context.ContextLoader- Context initialization failed
org.springframework.beans.factory.BeanCreationException: Error creating bean with name ‘visitService’ defined in ServletContext resource [/WEB-INF/applicationContext.xml]: Cannot resolve reference to bean ‘specimenSvc’ while setting bean property ‘specimenSvc’; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name ‘specimenSvc’ defined in ServletContext resource [/WEB-INF/applicationContext.xml]: Cannot resolve reference to bean ‘specimenFactory’ while setting bean property ‘specimenFactory’; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name ‘specimenFactory’ defined in ServletContext resource [/WEB-INF/applicationContext.xml]: Cannot resolve reference to bean ‘storageContainerSvc’ while setting bean property ‘containerSvc’; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name ‘storageContainerSvc’ defined in ServletContext resource [/WEB-INF/applicationContext.xml]: Cannot resolve reference to bean ‘exportSvc’ while setting bean property ‘exportSvc’; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name ‘exportSvc’ defined in ServletContext resource [/WEB-INF/applicationContext.xml]: Cannot resolve reference to bean ‘objectSchemaFactory’ while setting bean property ‘schemaFactory’; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name ‘objectSchemaFactory’ defined in ServletContext resource [/WEB-INF/applicationContext.xml]: Error setting property values; nested exception is org.springframework.beans.PropertyBatchUpdateException; nested PropertyAccessExceptions (1) are:
PropertyAccessException 1: org.springframework.beans.MethodInvocationException: Property ‘schemaResources’ threw exception; nested exception is com.thoughtworks.xstream.io.StreamException:
at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:359)
at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveValueIfNecessary(BeanDefinitionValueResolver.java:108)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyPropertyValues(AbstractAutowireCapableBeanFactory.java:1534)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:1281)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:551)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:481)
at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:312)
at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:230)
at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:308)
at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:197)
at org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:761)
at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:867)
at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:543)
at org.springframework.web.context.ContextLoader.configureAndRefreshWebApplicationContext(ContextLoader.java:443)
at org.springframework.web.context.ContextLoader.initWebApplicationContext(ContextLoader.java:325)
at org.springframework.web.context.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:107)
at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:4716)
at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5177)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:183)
at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:717)
at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:690)
at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:706)
at org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:978)
at org.apache.catalina.startup.HostConfig$DeployWar.run(HostConfig.java:1848)
at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at org.apache.tomcat.util.threads.InlineExecutorService.execute(InlineExecutorService.java:75)
at java.util.concurrent.AbstractExecutorService.submit(AbstractExecutorService.java:112)
at org.apache.catalina.startup.HostConfig.deployWARs(HostConfig.java:773)
at org.apache.catalina.startup.HostConfig.deployApps(HostConfig.java:427)
at org.apache.catalina.startup.HostConfig.start(HostConfig.java:1576)
at org.apache.catalina.startup.HostConfig.lifecycleEvent(HostConfig.java:309)
at org.apache.catalina.util.LifecycleBase.fireLifecycleEvent(LifecycleBase.java:123)
at org.apache.catalina.util.LifecycleBase.setStateInternal(LifecycleBase.java:423)
at org.apache.catalina.util.LifecycleBase.setState(LifecycleBase.java:366)
at org.apache.catalina.core.ContainerBase.startInternal(ContainerBase.java:936)
at org.apache.catalina.core.StandardHost.startInternal(StandardHost.java:843)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:183)
at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1384)
at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1374)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at org.apache.tomcat.util.threads.InlineExecutorService.execute(InlineExecutorService.java:75)
at java.util.concurrent.AbstractExecutorService.submit(AbstractExecutorService.java:134)
at org.apache.catalina.core.ContainerBase.startInternal(ContainerBase.java:909)
at org.apache.catalina.core.StandardEngine.startInternal(StandardEngine.java:262)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:183)
at org.apache.catalina.core.StandardService.startInternal(StandardService.java:421)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:183)
at org.apache.catalina.core.StandardServer.startInternal(StandardServer.java:930)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:183)
at org.apache.catalina.startup.Catalina.start(Catalina.java:772)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.apache.catalina.startup.Bootstrap.start(Bootstrap.java:342)
at org.apache.catalina.startup.Bootstrap.main(Bootstrap.java:473)
Caused by: org.springframework.beans.factory.BeanCreationException: Error creating bean with name ‘specimenSvc’ defined in ServletContext resource [/WEB-INF/applicationContext.xml]: Cannot resolve reference to bean ‘specimenFactory’ while setting bean property ‘specimenFactory’; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name ‘specimenFactory’ defined in ServletContext resource [/WEB-INF/applicationContext.xml]: Cannot resolve reference to bean ‘storageContainerSvc’ while setting bean property ‘containerSvc’; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name ‘storageContainerSvc’ defined in ServletContext resource [/WEB-INF/applicationContext.xml]: Cannot resolve reference to bean ‘exportSvc’ while setting bean property ‘exportSvc’; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name ‘exportSvc’ defined in ServletContext resource [/WEB-INF/applicationContext.xml]: Cannot resolve reference to bean ‘objectSchemaFactory’ while setting bean property ‘schemaFactory’; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name ‘objectSchemaFactory’ defined in ServletContext resource [/WEB-INF/applicationContext.xml]: Error setting property values; nested exception is org.springframework.beans.PropertyBatchUpdateException; nested PropertyAccessExceptions (1) are:
PropertyAccessException 1: org.springframework.beans.MethodInvocationException: Property ‘schemaResources’ threw exception; nested exception is com.thoughtworks.xstream.io.StreamException:
at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:359)
at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveValueIfNecessary(BeanDefinitionValueResolver.java:108)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyPropertyValues(AbstractAutowireCapableBeanFactory.java:1534)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:1281)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:551)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:481)
at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:312)
at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:230)
at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:308)
at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:197)
at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:351)
… 56 more
Caused by: org.springframework.beans.factory.BeanCreationException: Error creating bean with name ‘specimenFactory’ defined in ServletContext resource [/WEB-INF/applicationContext.xml]: Cannot resolve reference to bean ‘storageContainerSvc’ while setting bean property ‘containerSvc’; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name ‘storageContainerSvc’ defined in ServletContext resource [/WEB-INF/applicationContext.xml]: Cannot resolve reference to bean ‘exportSvc’ while setting bean property ‘exportSvc’; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name ‘exportSvc’ defined in ServletContext resource [/WEB-INF/applicationContext.xml]: Cannot resolve reference to bean ‘objectSchemaFactory’ while setting bean property ‘schemaFactory’; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name ‘objectSchemaFactory’ defined in ServletContext resource [/WEB-INF/applicationContext.xml]: Error setting property values; nested exception is org.springframework.beans.PropertyBatchUpdateException; nested PropertyAccessExceptions (1) are:
PropertyAccessException 1: org.springframework.beans.MethodInvocationException: Property ‘schemaResources’ threw exception; nested exception is com.thoughtworks.xstream.io.StreamException:
at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:359)
at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveValueIfNecessary(BeanDefinitionValueResolver.java:108)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyPropertyValues(AbstractAutowireCapableBeanFactory.java:1534)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:1281)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:551)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:481)
at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:312)
at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:230)
at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:308)
at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:197)
at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:351)
… 66 more
Caused by: org.springframework.beans.factory.BeanCreationException: Error creating bean with name ‘storageContainerSvc’ defined in ServletContext resource [/WEB-INF/applicationContext.xml]: Cannot resolve reference to bean ‘exportSvc’ while setting bean property ‘exportSvc’; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name ‘exportSvc’ defined in ServletContext resource [/WEB-INF/applicationContext.xml]: Cannot resolve reference to bean ‘objectSchemaFactory’ while setting bean property ‘schemaFactory’; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name ‘objectSchemaFactory’ defined in ServletContext resource [/WEB-INF/applicationContext.xml]: Error setting property values; nested exception is org.springframework.beans.PropertyBatchUpdateException; nested PropertyAccessExceptions (1) are:
PropertyAccessException 1: org.springframework.beans.MethodInvocationException: Property ‘schemaResources’ threw exception; nested exception is com.thoughtworks.xstream.io.StreamException:
at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:359)
at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveValueIfNecessary(BeanDefinitionValueResolver.java:108)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyPropertyValues(AbstractAutowireCapableBeanFactory.java:1534)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:1281)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:551)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:481)
at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:312)
at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:230)
at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:308)
at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:197)
at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:351)
… 76 more
Caused by: org.springframework.beans.factory.BeanCreationException: Error creating bean with name ‘exportSvc’ defined in ServletContext resource [/WEB-INF/applicationContext.xml]: Cannot resolve reference to bean ‘objectSchemaFactory’ while setting bean property ‘schemaFactory’; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name ‘objectSchemaFactory’ defined in ServletContext resource [/WEB-INF/applicationContext.xml]: Error setting property values; nested exception is org.springframework.beans.PropertyBatchUpdateException; nested PropertyAccessExceptions (1) are:
PropertyAccessException 1: org.springframework.beans.MethodInvocationException: Property ‘schemaResources’ threw exception; nested exception is com.thoughtworks.xstream.io.StreamException:
at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:359)
at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveValueIfNecessary(BeanDefinitionValueResolver.java:108)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyPropertyValues(AbstractAutowireCapableBeanFactory.java:1534)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:1281)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:551)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:481)
at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:312)
at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:230)
at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:308)
at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:197)
at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:351)
… 86 more
Caused by: org.springframework.beans.factory.BeanCreationException: Error creating bean with name ‘objectSchemaFactory’ defined in ServletContext resource [/WEB-INF/applicationContext.xml]: Error setting property values; nested exception is org.springframework.beans.PropertyBatchUpdateException; nested PropertyAccessExceptions (1) are:
PropertyAccessException 1: org.springframework.beans.MethodInvocationException: Property ‘schemaResources’ threw exception; nested exception is com.thoughtworks.xstream.io.StreamException:
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyPropertyValues(AbstractAutowireCapableBeanFactory.java:1571)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:1281)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:551)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:481)
at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:312)
at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:230)
at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:308)
at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:197)
at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:351)
… 96 more
Caused by: org.springframework.beans.PropertyBatchUpdateException; nested PropertyAccessExceptions (1) are:
PropertyAccessException 1: org.springframework.beans.MethodInvocationException: Property ‘schemaResources’ threw exception; nested exception is com.thoughtworks.xstream.io.StreamException:
at org.springframework.beans.AbstractPropertyAccessor.setPropertyValues(AbstractPropertyAccessor.java:121)
at org.springframework.beans.AbstractPropertyAccessor.setPropertyValues(AbstractPropertyAccessor.java:75)
org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyPropertyValues(AbstractAutowireCapableBeanFactory.java:1567)
Hi Jack,
Your contxt.xml file configuration is failed.
Please check your context.xml file which is present in the tomcat/conf directory.
Give the absolute path to the log4j file. (Or you can leave that blank. Because that file is optional)
Thanks,
Kaustubh
context.xml
<?xml version="1.0" encoding="UTF-8"?><!-- Default set of monitored resources. If one of these changes, the -->
<!-- web application will be reloaded. -->
<WatchedResource>WEB-INF/web.xml</WatchedResource>
<WatchedResource>WEB-INF/tomcat-web.xml</WatchedResource>
<WatchedResource>${catalina.base}/conf/web.xml</WatchedResource>
<!-- Uncomment this to disable session persistence across Tomcat restarts -->
<!--
driverClassName="com.mysql.jdbc.Driver"
maxActive="100"
maxWait="10000"
driverClassName="com.mysql.cj.jdbc.Driver"
maxTotal="100"
maxWaitMillis="10000"
<Manager pathname="" />
-->
<Resource
name="jdbc/open"
auth="Container"
type="javax.sql.DataSource"
maxTotal="100"
maxIdle="30"
maxWaitMillis="10000"
username="root"
password="111111"
driverClassName="com.mysql.jdbc.Driver"
url="jdbc:mysql://localhost:3306/open?serverTimezone=GMT%2B8"/>
<Environment
name="config/open"
value="D:/apache-tomcat-9.0.39/conf/openspecimen.properties"
type="java.lang.String"/>
openspecimen.properties
#######################################################################
Windows users, please note the directories should be separated using
forward slashes as in below example:
D:/openspecimen/tomcat
D:/opnespecimen/data
D:/openspecimen/plugins
#######################################################################
This field is useful for deploying multiple OpenSpecimen
instances on the one Tomcat server. E.g. “os-test” and
“os-prod”.
app.name=open
Name of datasource configured in the Tomcat’s context.xml.
Usually, it is “jdbc/openspecimen”.
datasource.jndi=jdbc/open
Value can be mysql or oracle
database.type=mysql
Value can be fresh or upgrade.
This should be “upgrade” if the database was initially upgraded from caTissue.
Note: This should be fresh for all other cases.
datasource.type=fresh
Absolute path where Tomcat is installed
tomcat.dir=D:/apache-tomcat-9.0.39
Absolute path to OpenSpecimen data directory.
Best practice: Create a folder in parallel to ‘tomcat.dir’ with
the name “openspecimen/data”
app.data_dir=D:/data
Absolute path to OpenSpecimen data directory.
Best practice: Create a folder in parallel to ‘tomcat.dir’ with
the name “openspecimen/plugins”
plugin.dir=D:/plugins
Optional. Absolute path of the customised logging configuration file.
The configuration file should follow log4j configuration rules.
app.log_conf=
Hi Jack,
Please recheck your context.xml and configure the context.xml file again.
Thanks,
Kaustubh
I didn’t find the error of context.xml .
Can u please ?
I follow the step but it doesn’t run correctly.