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  • Error while change status of collected specimen

    Dear OS community.

    I have an issue when I change the status of a specimen from “collected” to “missed collection”.
    The specimen was previously collected and stored in a dimensionless container. When I try to edit the status from “collected” to “missed collection”, I get an error message.

    This is the output in the log file:

    2017-10-23 16:06:28,666 [http-nio-8080-exec-10] ERROR com.krishagni.catissueplus.core.common.TransactionalInterceptor- Error doing work inside ResponseEvent com.krishagni.catissueplus.core.biospecimen.services.impl.SpecimenServiceImpl.updateSpecimen(RequestEvent)
    org.hibernate.NonUniqueObjectException: a different object with the same identifier value was already associated with the session: [krishagni.catissueplus.beans.FormRecordEntryBean#993]
    at org.hibernate.engine.internal.StatefulPersistenceContext.checkUniqueness(StatefulPersistenceContext.java:696)
    at org.hibernate.event.internal.DefaultSaveOrUpdateEventListener.performUpdate(DefaultSaveOrUpdateEventListener.java:296)
    at org.hibernate.event.internal.DefaultSaveOrUpdateEventListener.entityIsDetached(DefaultSaveOrUpdateEventListener.java:241)
    at org.hibernate.event.internal.DefaultSaveOrUpdateEventListener.performSaveOrUpdate(DefaultSaveOrUpdateEventListener.java:109)
    at org.hibernate.event.internal.DefaultSaveOrUpdateEventListener.onSaveOrUpdate(DefaultSaveOrUpdateEventListener.java:90)
    at org.hibernate.internal.SessionImpl.fireSaveOrUpdate(SessionImpl.java:654)
    at org.hibernate.internal.SessionImpl.saveOrUpdate(SessionImpl.java:646)
    at org.hibernate.internal.SessionImpl.saveOrUpdate(SessionImpl.java:642)
    at com.krishagni.catissueplus.core.de.repository.impl.FormDaoImpl.saveOrUpdateRecordEntry(FormDaoImpl.java:347)
    at com.krishagni.catissueplus.core.de.domain.DeObject.delete(DeObject.java:146)
    at com.krishagni.catissueplus.core.biospecimen.domain.Specimen.deleteEvents(Specimen.java:1249)
    at com.krishagni.catissueplus.core.biospecimen.domain.Specimen.updateHierarchyStatus(Specimen.java:1286)
    at com.krishagni.catissueplus.core.biospecimen.domain.Specimen.updateCollectionStatus(Specimen.java:756)
    at com.krishagni.catissueplus.core.biospecimen.domain.Specimen.update(Specimen.java:685)
    at com.krishagni.catissueplus.core.biospecimen.services.impl.SpecimenServiceImpl.saveOrUpdate(SpecimenServiceImpl.java:749)
    at com.krishagni.catissueplus.core.biospecimen.services.impl.SpecimenServiceImpl.updateSpecimen(SpecimenServiceImpl.java:568)
    at com.krishagni.catissueplus.core.biospecimen.services.impl.SpecimenServiceImpl.updateSpecimen_aroundBody10(SpecimenServiceImpl.java:214)
    at com.krishagni.catissueplus.core.biospecimen.services.impl.SpecimenServiceImpl$AjcClosure11.run(SpecimenServiceImpl.java:1)
    at org.aspectj.runtime.reflect.JoinPointImpl.proceed(JoinPointImpl.java:149)
    at com.krishagni.catissueplus.core.common.TransactionalInterceptor$1.doInTransaction(TransactionalInterceptor.java:104)
    at org.springframework.transaction.support.TransactionTemplate.execute(TransactionTemplate.java:131)
    at com.krishagni.catissueplus.core.common.TransactionalInterceptor.doWork0(TransactionalInterceptor.java:96)
    at com.krishagni.catissueplus.core.common.TransactionalInterceptor.doWork(TransactionalInterceptor.java:78)
    at com.krishagni.catissueplus.core.common.TransactionalInterceptor.ajc$inlineAccessMethod$com_krishagni_catissueplus_core_common_TransactionalInterceptor$com_krishagni_catissueplus_core_common_TransactionalInterceptor$doWork(TransactionalInterceptor.java:1)
    at com.krishagni.catissueplus.core.common.TransactionalInterceptor.startTransaction(TransactionalInterceptor.java:64)
    at com.krishagni.catissueplus.core.biospecimen.services.impl.SpecimenServiceImpl.updateSpecimen(SpecimenServiceImpl.java:210)
    at com.krishagni.catissueplus.rest.controller.SpecimensController.updateSpecimen(SpecimensController.java:178)
    at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke(Method.java:498)
    at org.springframework.web.method.support.InvocableHandlerMethod.invoke(InvocableHandlerMethod.java:215)
    at org.springframework.web.method.support.InvocableHandlerMethod.invokeForRequest(InvocableHandlerMethod.java:132)
    at org.springframework.web.servlet.mvc.method.annotation.ServletInvocableHandlerMethod.invokeAndHandle(ServletInvocableHandlerMethod.java:104)
    at org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerAdapter.invokeHandleMethod(RequestMappingHandlerAdapter.java:743)
    at org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerAdapter.handleInternal(RequestMappingHandlerAdapter.java:672)
    at org.springframework.web.servlet.mvc.method.AbstractHandlerMethodAdapter.handle(AbstractHandlerMethodAdapter.java:82)
    at org.springframework.web.servlet.DispatcherServlet.doDispatch(DispatcherServlet.java:919)
    at org.springframework.web.servlet.DispatcherServlet.doService(DispatcherServlet.java:851)
    at org.springframework.web.servlet.FrameworkServlet.processRequest(FrameworkServlet.java:953)
    at org.springframework.web.servlet.FrameworkServlet.doPut(FrameworkServlet.java:866)
    at javax.servlet.http.HttpServlet.service(HttpServlet.java:664)
    at org.springframework.web.servlet.FrameworkServlet.service(FrameworkServlet.java:829)
    at javax.servlet.http.HttpServlet.service(HttpServlet.java:742)
    at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:230)
    at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:165)
    at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52)
    at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:192)
    at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:165)
    at org.springframework.web.filter.CharacterEncodingFilter.doFilterInternal(CharacterEncodingFilter.java:88)
    at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:106)
    at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:192)
    at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:165)
    at com.krishagni.catissueplus.rest.filter.AuthTokenFilter.doFilter(AuthTokenFilter.java:152)
    at org.springframework.web.filter.DelegatingFilterProxy.invokeDelegate(DelegatingFilterProxy.java:343)
    at org.springframework.web.filter.DelegatingFilterProxy.doFilter(DelegatingFilterProxy.java:260)
    at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:192)
    at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:165)
    at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:198)
    at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:96)
    at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:478)
    at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:140)
    at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:80)
    at org.apache.catalina.valves.AbstractAccessLogValve.invoke(AbstractAccessLogValve.java:624)
    at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:87)
    at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:341)
    at org.apache.coyote.http11.Http11Processor.service(Http11Processor.java:783)
    at org.apache.coyote.AbstractProcessorLight.process(AbstractProcessorLight.java:66)
    at org.apache.coyote.AbstractProtocol$ConnectionHandler.process(AbstractProtocol.java:798)
    at org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.doRun(NioEndpoint.java:1441)
    at org.apache.tomcat.util.net.SocketProcessorBase.run(SocketProcessorBase.java:49)
    at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
    at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
    at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61)
    at java.lang.Thread.run(Thread.java:748)
    2017-10-23 16:06:28,715 [http-nio-8080-exec-10] ERROR com.krishagni.catissueplus.core.common.TransactionalInterceptor- No admin or IT admin email ID has been configured to send uncaught system errors
    2017-10-23 16:06:28,767 [http-nio-8080-exec-10] ERROR com.krishagni.catissueplus.rest.RestErrorController- Error handling request
    org.hibernate.NonUniqueObjectException: a different object with the same identifier value was already associated with the session: [krishagni.catissueplus.beans.FormRecordEntryBean#993]
    at org.hibernate.engine.internal.StatefulPersistenceContext.checkUniqueness(StatefulPersistenceContext.java:696)
    at org.hibernate.event.internal.DefaultSaveOrUpdateEventListener.performUpdate(DefaultSaveOrUpdateEventListener.java:296)
    at org.hibernate.event.internal.DefaultSaveOrUpdateEventListener.entityIsDetached(DefaultSaveOrUpdateEventListener.java:241)
    at org.hibernate.event.internal.DefaultSaveOrUpdateEventListener.performSaveOrUpdate(DefaultSaveOrUpdateEventListener.java:109)
    at org.hibernate.event.internal.DefaultSaveOrUpdateEventListener.onSaveOrUpdate(DefaultSaveOrUpdateEventListener.java:90)
    at org.hibernate.internal.SessionImpl.fireSaveOrUpdate(SessionImpl.java:654)
    at org.hibernate.internal.SessionImpl.saveOrUpdate(SessionImpl.java:646)
    at org.hibernate.internal.SessionImpl.saveOrUpdate(SessionImpl.java:642)
    at com.krishagni.catissueplus.core.de.repository.impl.FormDaoImpl.saveOrUpdateRecordEntry(FormDaoImpl.java:347)
    at com.krishagni.catissueplus.core.de.domain.DeObject.delete(DeObject.java:146)
    at com.krishagni.catissueplus.core.biospecimen.domain.Specimen.deleteEvents(Specimen.java:1249)
    at com.krishagni.catissueplus.core.biospecimen.domain.Specimen.updateHierarchyStatus(Specimen.java:1286)
    at com.krishagni.catissueplus.core.biospecimen.domain.Specimen.updateCollectionStatus(Specimen.java:756)
    at com.krishagni.catissueplus.core.biospecimen.domain.Specimen.update(Specimen.java:685)
    at com.krishagni.catissueplus.core.biospecimen.services.impl.SpecimenServiceImpl.saveOrUpdate(SpecimenServiceImpl.java:749)
    at com.krishagni.catissueplus.core.biospecimen.services.impl.SpecimenServiceImpl.updateSpecimen(SpecimenServiceImpl.java:568)
    at com.krishagni.catissueplus.core.biospecimen.services.impl.SpecimenServiceImpl.updateSpecimen_aroundBody10(SpecimenServiceImpl.java:214)
    at com.krishagni.catissueplus.core.biospecimen.services.impl.SpecimenServiceImpl$AjcClosure11.run(SpecimenServiceImpl.java:1)
    at org.aspectj.runtime.reflect.JoinPointImpl.proceed(JoinPointImpl.java:149)
    at com.krishagni.catissueplus.core.common.TransactionalInterceptor$1.doInTransaction(TransactionalInterceptor.java:104)
    at org.springframework.transaction.support.TransactionTemplate.execute(TransactionTemplate.java:131)
    at com.krishagni.catissueplus.core.common.TransactionalInterceptor.doWork0(TransactionalInterceptor.java:96)
    at com.krishagni.catissueplus.core.common.TransactionalInterceptor.doWork(TransactionalInterceptor.java:78)
    at com.krishagni.catissueplus.core.common.TransactionalInterceptor.ajc$inlineAccessMethod$com_krishagni_catissueplus_core_common_TransactionalInterceptor$com_krishagni_catissueplus_core_common_TransactionalInterceptor$doWork(TransactionalInterceptor.java:1)
    at com.krishagni.catissueplus.core.common.TransactionalInterceptor.startTransaction(TransactionalInterceptor.java:64)
    at com.krishagni.catissueplus.core.biospecimen.services.impl.SpecimenServiceImpl.updateSpecimen(SpecimenServiceImpl.java:210)
    at com.krishagni.catissueplus.rest.controller.SpecimensController.updateSpecimen(SpecimensController.java:178)
    at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke(Method.java:498)
    at org.springframework.web.method.support.InvocableHandlerMethod.invoke(InvocableHandlerMethod.java:215)
    at org.springframework.web.method.support.InvocableHandlerMethod.invokeForRequest(InvocableHandlerMethod.java:132)
    at org.springframework.web.servlet.mvc.method.annotation.ServletInvocableHandlerMethod.invokeAndHandle(ServletInvocableHandlerMethod.java:104)
    at org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerAdapter.invokeHandleMethod(RequestMappingHandlerAdapter.java:743)
    at org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerAdapter.handleInternal(RequestMappingHandlerAdapter.java:672)
    at org.springframework.web.servlet.mvc.method.AbstractHandlerMethodAdapter.handle(AbstractHandlerMethodAdapter.java:82)
    at org.springframework.web.servlet.DispatcherServlet.doDispatch(DispatcherServlet.java:919)
    at org.springframework.web.servlet.DispatcherServlet.doService(DispatcherServlet.java:851)
    at org.springframework.web.servlet.FrameworkServlet.processRequest(FrameworkServlet.java:953)
    at org.springframework.web.servlet.FrameworkServlet.doPut(FrameworkServlet.java:866)
    at javax.servlet.http.HttpServlet.service(HttpServlet.java:664)
    at org.springframework.web.servlet.FrameworkServlet.service(FrameworkServlet.java:829)
    at javax.servlet.http.HttpServlet.service(HttpServlet.java:742)
    at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:230)
    at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:165)
    at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:52)
    at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:192)
    at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:165)
    at org.springframework.web.filter.CharacterEncodingFilter.doFilterInternal(CharacterEncodingFilter.java:88)
    at org.springframework.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:106)
    at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:192)
    at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:165)
    at com.krishagni.catissueplus.rest.filter.AuthTokenFilter.doFilter(AuthTokenFilter.java:152)
    at org.springframework.web.filter.DelegatingFilterProxy.invokeDelegate(DelegatingFilterProxy.java:343)
    at org.springframework.web.filter.DelegatingFilterProxy.doFilter(DelegatingFilterProxy.java:260)
    at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:192)
    at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:165)
    at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:198)
    at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:96)
    at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:478)
    at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:140)
    at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:80)
    at org.apache.catalina.valves.AbstractAccessLogValve.invoke(AbstractAccessLogValve.java:624)
    at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:87)
    at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:341)
    at org.apache.coyote.http11.Http11Processor.service(Http11Processor.java:783)
    at org.apache.coyote.AbstractProcessorLight.process(AbstractProcessorLight.java:66)
    at org.apache.coyote.AbstractProtocol$ConnectionHandler.process(AbstractProtocol.java:798)
    at org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.doRun(NioEndpoint.java:1441)
    at org.apache.tomcat.util.net.SocketProcessorBase.run(SocketProcessorBase.java:49)
    at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
    at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
    at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61)
    at java.lang.Thread.run(Thread.java:748)

    Thanks for any help!

    Cheers, Michael

    Dear community.

    How do you handle wrongly collected specimen? For me, this seems not to be a very unusual situation.
    Could it be that it is not useful to change the status from “collected” to “missed collection”?
    Should I better “delete” the collected specimen?

    Thanks for your input!
    Greetings,
    Michael