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    OpenSpecimen v2.0 build for feedback

    Announcements
    #1

    The OS v2.0 build is available for testing here:

    URL: http://128.199.204.227/openspecimen/v20.do
    Login: admin@admin.com
    Password: Login!@3

    Feel free to email us questions or feedback.

    We will keep posting regular updates about the progress and new features released.

    ~Sri

    #2

    OpenSpecimen v2.0 demo site details can be found in this thread. Any comments on the UI can also be posted in this thread.

    ~Sri

    #3

    Will there be organized community testing as there was for v1.1? If so, is there a date for that?

    #4

    Yes, there will be.

    We do not have dates for now. Will keep the forums updated.

    ~Sri

    #5

    Thanks! How about a beta version for local testing? Is there a date for that?

    #6

    Hi Bob,

    Dates not yet fixed for the release of the beta version. We will update the forum soon with the dates.

    Thanks,
    Kruti

    #7

    @bob_lange

    You are welcome to test v2.0 on the public demo site and provide us your feedback.

    URL: 128.199.204.227/openspecimen/v20.do
    User name: admin@admin.com
    Password: Login!@3

    Thanks,
    ~Sri

    #8

    Hi Sri,

    Is there another account for us to preview the scientist or technician role?

    Thanks,
    Shannon

    #9

    @Shannon_Dalton

    v2.0 build with role/privileges driven access and user interface will be released by next of next week - April 17th.

    Thanks,
    ~Sri

    #10

    I have been trying to test the REST API and what it worked before in O.S 1.1 now it does not on version 2

    Here’s the HTTP request

    URL: http://128.199.204.227/openspecimen/rest/ng/participants
    METHOD: POST

    [HEADERS]
    Authorization: Basic YWRtaW5AYWRtaW4uY29tOkxvZ2luIUAz

    [PARAMETERS]

    [CONTENT]
    {“ethnicity” : “Unknown”, “firstName” : “ASDAAA”, “gender” : “Male Gender”, “lastName” : “ASDDD”, “pmiCollection” : [ { “mrn” : “324r6”, “siteName” : “LAB1” } ], “race” : [ “Asian” ], “ssn” : “123-45-6789”}

    -------------I ADDED the LAB 1 SITE into your public OS DB

    the response is

    HTTP Sender error
    ERROR MESSAGE: JBoss Web/2.1.3.GA - Error report

    HTTP Status 400 -

    type Status report

    message

    description The request sent by the client was syntactically incorrect ().

    JBoss Web/2.1.3.GA

    ---- also I did the local installation on windows server and it seems the installation was a partial installation because the settings page did not even open.

    Here’s the guide I used -> the GUI has some differences from the one you have.

    catissueplus.atlassian.net/wiki/display/CAT/Steps+to+deploy+OpenSpeicmen+2.0

    #11

    Hi,
    I tried to install http://demo.openspecimen.org/test_builds/os-2.0-beta.zip on a linux machine (CentOS), but will not start due to some problems with log4j:

    log4j:ERROR A "org.jboss.logging.appender.FileAppender" object is not assignable to a "org.apache.log4j.Appender" variable.
log4j:ERROR The class "org.apache.log4j.Appender" was loaded by
log4j:ERROR [BaseClassLoader@8ae07d{vfszip:/opt/jboss-5.1.0.GA/server/default/deploy/openspecimen.war/}] whereas object of type
log4j:ERROR "org.jboss.logging.appender.FileAppender" was loaded by [org.jboss.bootstrap.NoAnnotationURLClassLoader@7aacc1].
log4j:ERROR Could not instantiate appender named "FILE".

    I have seen hardcoded windows filenames in log4jConfig.xml, but changing or commenting do not help.

    Victor

    #12

    Hello @vmoreno

    The errors you pointed out should not cause any problem in starting OpenSpecimen. They can be ignored. Are there any other errors in log file. Can you attach $JBOSS_HOME/server/default/log/server.log file?

    BTW, FYI, log4jConfig.xml file that you are referring will go away from final build.

    Thanks.

    #13

    Hi,
    Here is the server.log file:
    server.log.zip (6.8 KB)

    I installed jboss-5.1.0.GA_slimmed, then os-2.0-beta.zip on top of it. I tried first in a separate folder, but had similar problems. os-2.0-beta seems to have a complete copy of jboss-5.1.0.GA_slimmed.
    A clean Jboss-5.1.0.GA (before being slimmed) starts ok, before adding os-2.0-beta. The slimmed version throws some messages in relation to the missing components.
    Previously I installed apache-ant and jdk (have tried 1.6 and 1.7).

    Thanks

    #14

    Hello @vmoreno

    From log files, it appears OpenSpecimen got deployed successfully. I can see configuration settings and other initialization routines have run correctly without any errors. The deployment errors that you see in logs are due to removal of some unwanted services from JBoss. You can access OpenSpecimen UI using following URL:

    http://< host >:< port >/openspecimen/v20.do
    Login: admin@admin.com
    Password: Login!@3

    Secondly, the demo package os- 20-beta.zip is bundled with JBoss, so you do not have to use a separate JBoss for testing this demo package. @nitesh_marwaha from our team will soon share with you details on how to deploy OS v2.0 demo package.

    Thanks.

    #15

    Hi @vmoreno,

    Please refer https://catissueplus.atlassian.net/wiki/x/HwBrAg for the steps to deploy the demo package.

    ~Nitesh

    #16

    Hi,
    I confirm that it works now on linux.
    I had to fix two issues to make it work:
    chmod +x bin/*.sh
    set JBOSS_HOME pointing to the installation folder.

    Thanks
    Victor

    #17

    Sorry one more thing. The demo user admin@admin.com cannot change roles and almost all options are blocked. Is there other user or a way to change this?
    Thanks

    #18

    Hello Victor,

    v2.0 build with role/privileges driven access and user interface will be released by the end of this week - April 17th.

    Please evaluate other features like container, collection protocol and data entry as of now.

    Thanks,
    Poornima